PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0064s0035.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 415aa    MW: 43497.9 Da    PI: 7.4825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0064s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-066385527
                          --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                          +Cr++     C+yG++C+F Hgp
  Sphfalx0064s0035.1.p 63 ECRRYNSPEGCPYGSSCRFKHGP 85
                          6999999999***********96 PP

2zf-CCCH17.57.2e-06101124225
                           -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                           kt++C  f+ t  C+yG+ C+F H
  Sphfalx0064s0035.1.p 101 KTKPCTKFFSTSGCPYGEGCHFLH 124
                           9*********************** PP

3zf-CCCH29.21.6e-09202228127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC++f+    C++G+rC+FaHg+
  Sphfalx0064s0035.1.p 202 FKTRLCNRFSMPDGCRFGERCHFAHGE 228
                           79***********************96 PP

4zf-CCCH26.31.3e-08379403126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC ++ + GtC + d C+FaHg
  Sphfalx0064s0035.1.p 379 FKTKLCENYTQ-GTCTFADHCHFAHG 403
                           69*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7565886IPR000571Zinc finger, CCCH-type
SMARTSM003560.885885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-56187IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-46385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-66488IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.46599127IPR000571Zinc finger, CCCH-type
SMARTSM003560.6399126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-699125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-9101124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08201229IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4201228IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6202228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13202233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8202232IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.11E-13284365IPR004088K Homology domain, type 1
SMARTSM003221.4E-12289359IPR004087K Homology domain
PROSITE profilePS5008414.886290354IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.4E-15291360IPR004088K Homology domain, type 1
CDDcd001055.33E-13294354No hitNo description
PfamPF000135.6E-10296355IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.1E-14376409IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-8377408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887378405IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6378404IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-6379403IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSYEPALKK SRLAYLDTGA PGTVNLAAMS NGNHGVALGL HATTAAAALD LQAMSMQING  60
DQECRRYNSP EGCPYGSSCR FKHGPTDDRD LGQPVSALGS KTKPCTKFFS TSGCPYGEGC  120
HFLHYVPGGI AALPGLMMPM TASAAGTGTC LYSATSGGGG WGPGLNNLGT EISTGGGPPG  180
SLYACSTAAA AADPATTSVG SFKTRLCNRF SMPDGCRFGE RCHFAHGESD LRPSNGISSL  240
HSNGFEYMAS AEGYANGAGT LMMTTPVPSA LYYGEPTPPG VTATTNFCAT SNTKMGIEAV  300
FAGAIIGKAG ANVKQISRLT GAKLSIREHE TDVNMRNVEM EGTYEQIEHA TEMVRQFLQQ  360
RAEVTVPQRA AVALSSHNFK TKLCENYTQG TCTFADHCHF AHGVHELRST NRLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764219.11e-120predicted protein, partial
TrEMBLA9SCW41e-119A9SCW4_PHYPA; Predicted protein (Fragment)
STRINGPP1S66_196V6.11e-145(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-39C3H family protein